2.50
Hdl Handle:
http://hdl.handle.net/10033/217010
Title:
Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).
Authors:
Han, Cliff; Mwirichia, Romano; Chertkov, Olga; Held, Brittany; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Tapia, Roxanne; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Ivanova, Natalia; Pagani, Ioanna; Mavromatis, Konstantinos; Ovchinikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne-Marie; Rohde, Manfred; Spring, Stefan; Sikorski, Johannes; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C; Klenk, Hans-Peter; Detter, John C
Abstract:
Syntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of tree of life. When grown in pure culture with glyoxylate as carbon source the organism utilizes glyoxylate through fermentative oxidation, whereas, when grown in syntrophic co-culture with homoacetogenic or methanogenic bacteria, it is able to oxidize glycolate to carbon dioxide and hydrogen. No other organic or inorganic carbon source is utilized by S. glycolicus. The subdivision of the family Peptococcaceae into genera does not reflect the natural relationships, particularly regarding the genera most closely related to Syntrophobotulus. Both Desulfotomaculum and Pelotomaculum are paraphyletic assemblages, and the taxonomic classification is in significant conflict with the 16S rRNA data. S. glycolicus is already the ninth member of the family Peptococcaceae with a completely sequenced and publicly available genome. The 3,406,739 bp long genome with its 3,370 protein-coding and 69 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). 2011, 4 (3):371-80 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
1-Jul-2011
URI:
http://hdl.handle.net/10033/217010
DOI:
10.4056/sigs.2004684
PubMed ID:
21886864
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorHan, Cliffen_GB
dc.contributor.authorMwirichia, Romanoen_GB
dc.contributor.authorChertkov, Olgaen_GB
dc.contributor.authorHeld, Brittanyen_GB
dc.contributor.authorLapidus, Allaen_GB
dc.contributor.authorNolan, Matten_GB
dc.contributor.authorLucas, Susanen_GB
dc.contributor.authorHammon, Nancyen_GB
dc.contributor.authorDeshpande, Shwetaen_GB
dc.contributor.authorCheng, Jan-Fangen_GB
dc.contributor.authorTapia, Roxanneen_GB
dc.contributor.authorGoodwin, Lynneen_GB
dc.contributor.authorPitluck, Samen_GB
dc.contributor.authorHuntemann, Marcelen_GB
dc.contributor.authorLiolios, Konstantinosen_GB
dc.contributor.authorIvanova, Nataliaen_GB
dc.contributor.authorPagani, Ioannaen_GB
dc.contributor.authorMavromatis, Konstantinosen_GB
dc.contributor.authorOvchinikova, Galinaen_GB
dc.contributor.authorPati, Amritaen_GB
dc.contributor.authorChen, Amyen_GB
dc.contributor.authorPalaniappan, Krishnaen_GB
dc.contributor.authorLand, Miriamen_GB
dc.contributor.authorHauser, Lorenen_GB
dc.contributor.authorBrambilla, Evelyne-Marieen_GB
dc.contributor.authorRohde, Manfreden_GB
dc.contributor.authorSpring, Stefanen_GB
dc.contributor.authorSikorski, Johannesen_GB
dc.contributor.authorGöker, Markusen_GB
dc.contributor.authorWoyke, Tanjaen_GB
dc.contributor.authorBristow, Jamesen_GB
dc.contributor.authorEisen, Jonathan Aen_GB
dc.contributor.authorMarkowitz, Victoren_GB
dc.contributor.authorHugenholtz, Philipen_GB
dc.contributor.authorKyrpides, Nikos Cen_GB
dc.contributor.authorKlenk, Hans-Peteren_GB
dc.contributor.authorDetter, John Cen_GB
dc.date.accessioned2012-03-29T11:44:32Z-
dc.date.available2012-03-29T11:44:32Z-
dc.date.issued2011-07-01-
dc.identifier.citationComplete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR). 2011, 4 (3):371-80 Stand Genomic Scien_GB
dc.identifier.issn1944-3277-
dc.identifier.pmid21886864-
dc.identifier.doi10.4056/sigs.2004684-
dc.identifier.urihttp://hdl.handle.net/10033/217010-
dc.description.abstractSyntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of tree of life. When grown in pure culture with glyoxylate as carbon source the organism utilizes glyoxylate through fermentative oxidation, whereas, when grown in syntrophic co-culture with homoacetogenic or methanogenic bacteria, it is able to oxidize glycolate to carbon dioxide and hydrogen. No other organic or inorganic carbon source is utilized by S. glycolicus. The subdivision of the family Peptococcaceae into genera does not reflect the natural relationships, particularly regarding the genera most closely related to Syntrophobotulus. Both Desulfotomaculum and Pelotomaculum are paraphyletic assemblages, and the taxonomic classification is in significant conflict with the 16S rRNA data. S. glycolicus is already the ninth member of the family Peptococcaceae with a completely sequenced and publicly available genome. The 3,406,739 bp long genome with its 3,370 protein-coding and 69 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.en_GB
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen_GB
dc.titleComplete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyR).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen_GB

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