2.50
Hdl Handle:
http://hdl.handle.net/10033/225679
Title:
Complete genome sequence of Acidaminococcus fermentans type strain (VR4).
Authors:
Chang, Yun-Juan; Pukall, Rüdiger; Saunders, Elizabeth; Lapidus, Alla; Copeland, Alex; Nolan, Matt; Glavina Del Rio, Tijana; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan-Fang; Han, Cliff; Detter, John C; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Mikhailova, Natalia; Liolios, Konstantinos; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D; Brettin, Thomas; Rohde, Manfred; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C; Klenk, Hans-Peter
Abstract:
Acidaminococcus fermentans (Rogosa 1969) is the type species of the genus Acidaminococcus, and is of phylogenetic interest because of its isolated placement in a genomically little characterized region of the Firmicutes. A. fermentans is known for its habitation of the gastrointestinal tract and its ability to oxidize trans-aconitate. Its anaerobic fermentation of glutamate has been intensively studied and will now be complemented by the genomic basis. The strain described in this report is a nonsporulating, nonmotile, Gram-negative coccus, originally isolated from a pig alimentary tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the family Acidaminococcaceae, and the 2,329,769 bp long genome with its 2,101 protein-coding and 81 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Complete genome sequence of Acidaminococcus fermentans type strain (VR4). 2010, 3 (1):1-14 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
2010
URI:
http://hdl.handle.net/10033/225679
DOI:
10.4056/sigs.1002553
PubMed ID:
21304687
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorChang, Yun-Juanen_GB
dc.contributor.authorPukall, Rüdigeren_GB
dc.contributor.authorSaunders, Elizabethen_GB
dc.contributor.authorLapidus, Allaen_GB
dc.contributor.authorCopeland, Alexen_GB
dc.contributor.authorNolan, Matten_GB
dc.contributor.authorGlavina Del Rio, Tijanaen_GB
dc.contributor.authorLucas, Susanen_GB
dc.contributor.authorChen, Fengen_GB
dc.contributor.authorTice, Hopeen_GB
dc.contributor.authorCheng, Jan-Fangen_GB
dc.contributor.authorHan, Cliffen_GB
dc.contributor.authorDetter, John Cen_GB
dc.contributor.authorBruce, Daviden_GB
dc.contributor.authorGoodwin, Lynneen_GB
dc.contributor.authorPitluck, Samen_GB
dc.contributor.authorMikhailova, Nataliaen_GB
dc.contributor.authorLiolios, Konstantinosen_GB
dc.contributor.authorPati, Amritaen_GB
dc.contributor.authorIvanova, Nataliaen_GB
dc.contributor.authorMavromatis, Konstantinosen_GB
dc.contributor.authorChen, Amyen_GB
dc.contributor.authorPalaniappan, Krishnaen_GB
dc.contributor.authorLand, Miriamen_GB
dc.contributor.authorHauser, Lorenen_GB
dc.contributor.authorJeffries, Cynthia Den_GB
dc.contributor.authorBrettin, Thomasen_GB
dc.contributor.authorRohde, Manfreden_GB
dc.contributor.authorGöker, Markusen_GB
dc.contributor.authorBristow, Jamesen_GB
dc.contributor.authorEisen, Jonathan Aen_GB
dc.contributor.authorMarkowitz, Victoren_GB
dc.contributor.authorHugenholtz, Philipen_GB
dc.contributor.authorKyrpides, Nikos Cen_GB
dc.contributor.authorKlenk, Hans-Peteren_GB
dc.date.accessioned2012-05-24T11:32:42Z-
dc.date.available2012-05-24T11:32:42Z-
dc.date.issued2010-
dc.identifier.citationComplete genome sequence of Acidaminococcus fermentans type strain (VR4). 2010, 3 (1):1-14 Stand Genomic Scien_GB
dc.identifier.issn1944-3277-
dc.identifier.pmid21304687-
dc.identifier.doi10.4056/sigs.1002553-
dc.identifier.urihttp://hdl.handle.net/10033/225679-
dc.description.abstractAcidaminococcus fermentans (Rogosa 1969) is the type species of the genus Acidaminococcus, and is of phylogenetic interest because of its isolated placement in a genomically little characterized region of the Firmicutes. A. fermentans is known for its habitation of the gastrointestinal tract and its ability to oxidize trans-aconitate. Its anaerobic fermentation of glutamate has been intensively studied and will now be complemented by the genomic basis. The strain described in this report is a nonsporulating, nonmotile, Gram-negative coccus, originally isolated from a pig alimentary tract. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of a member of the family Acidaminococcaceae, and the 2,329,769 bp long genome with its 2,101 protein-coding and 81 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.en_GB
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen_GB
dc.titleComplete genome sequence of Acidaminococcus fermentans type strain (VR4).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen_GB

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