Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.

2.50
Hdl Handle:
http://hdl.handle.net/10033/237052
Title:
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.
Authors:
Klenk, Hans-Peter; Lapidus, Alla; Chertkov, Olga; Copeland, Alex; Del Rio, Tijana Glavina; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan-Fang; Han, Cliff; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Pati, Amrita; Ivanova, Natalia; Mavromatis, Konstantinos; Daum, Chris; Chen, Amy; Palaniappan, Krishna; Chang, Yun-Juan; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D; Detter, John C; Rohde, Manfred; Abt, Birte; Pukall, Rüdiger; Göker, Markus; Bristow, James; Markowitz, Victor; Hugenholtz, Philip; Eisen, Jonathan A
Abstract:
Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2 as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. 2011, 5 (1):121-34 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
15-Oct-2011
URI:
http://hdl.handle.net/10033/237052
DOI:
10.4056/sigs.2144922
PubMed ID:
22180816
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorKlenk, Hans-Peteren_GB
dc.contributor.authorLapidus, Allaen_GB
dc.contributor.authorChertkov, Olgaen_GB
dc.contributor.authorCopeland, Alexen_GB
dc.contributor.authorDel Rio, Tijana Glavinaen_GB
dc.contributor.authorNolan, Matten_GB
dc.contributor.authorLucas, Susanen_GB
dc.contributor.authorChen, Fengen_GB
dc.contributor.authorTice, Hopeen_GB
dc.contributor.authorCheng, Jan-Fangen_GB
dc.contributor.authorHan, Cliffen_GB
dc.contributor.authorBruce, Daviden_GB
dc.contributor.authorGoodwin, Lynneen_GB
dc.contributor.authorPitluck, Samen_GB
dc.contributor.authorPati, Amritaen_GB
dc.contributor.authorIvanova, Nataliaen_GB
dc.contributor.authorMavromatis, Konstantinosen_GB
dc.contributor.authorDaum, Chrisen_GB
dc.contributor.authorChen, Amyen_GB
dc.contributor.authorPalaniappan, Krishnaen_GB
dc.contributor.authorChang, Yun-Juanen_GB
dc.contributor.authorLand, Miriamen_GB
dc.contributor.authorHauser, Lorenen_GB
dc.contributor.authorJeffries, Cynthia Den_GB
dc.contributor.authorDetter, John Cen_GB
dc.contributor.authorRohde, Manfreden_GB
dc.contributor.authorAbt, Birteen_GB
dc.contributor.authorPukall, Rüdigeren_GB
dc.contributor.authorGöker, Markusen_GB
dc.contributor.authorBristow, Jamesen_GB
dc.contributor.authorMarkowitz, Victoren_GB
dc.contributor.authorHugenholtz, Philipen_GB
dc.contributor.authorEisen, Jonathan Aen_GB
dc.date.accessioned2012-08-02T12:41:09Z-
dc.date.available2012-08-02T12:41:09Z-
dc.date.issued2011-10-15-
dc.identifier.citationComplete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. 2011, 5 (1):121-34 Stand Genomic Scien_GB
dc.identifier.issn1944-3277-
dc.identifier.pmid22180816-
dc.identifier.doi10.4056/sigs.2144922-
dc.identifier.urihttp://hdl.handle.net/10033/237052-
dc.description.abstractBacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established at the time of the initial description of the organism, 16S sequence data were not available and the strain was placed into the genus Bacillus based on limited chemotaxonomic information. Despite the now obvious misplacement of strain T2 as a member of the genus Bacillus in 16S rRNA-based phylogenetic trees, the misclassification remained uncorrected for many years, which was likely due to the extremely difficult, analysis-hampering cultivation conditions and poor growth rate of the strain. Here we provide a taxonomic re-evaluation of strain T2T (= DSM 2912 = NBRC 15312) and propose its reclassification as the type strain of a new species, Kyrpidia tusciae, and the type species of the new genus Kyrpidia, which is a sister-group of Alicyclobacillus. The family Alicyclobacillaceae da Costa and Rainey, 2010 is emended. The 3,384,766 bp genome with its 3,323 protein-coding and 78 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.en_GB
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen_GB
dc.titleComplete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen_GB

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