2.50
Hdl Handle:
http://hdl.handle.net/10033/237552
Title:
Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).
Authors:
Woyke, Tanja; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Del Rio, Tijana Glavina; Tice, Hope; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Brambilla, Evelyne-Marie; Rohde, Manfred; Mwirichia, Romano; Sikorski, Johannes; Tindall, Brian J; Göker, Markus; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Klenk, Hans-Peter; Kyrpides, Nikos C
Abstract:
Fluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of the tree of life. Strain RW262(T) forms a monophyletic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na(+) ions. All other genera in the family Cryomorphaceae are from marine habitats and have an absolute requirement for Na(+) ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). 2011, 5 (1):21-9 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
15-Oct-2011
URI:
http://hdl.handle.net/10033/237552
DOI:
10.4056/sigs.2124912
PubMed ID:
22180807
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorWoyke, Tanjaen_GB
dc.contributor.authorChertkov, Olgaen_GB
dc.contributor.authorLapidus, Allaen_GB
dc.contributor.authorNolan, Matten_GB
dc.contributor.authorLucas, Susanen_GB
dc.contributor.authorDel Rio, Tijana Glavinaen_GB
dc.contributor.authorTice, Hopeen_GB
dc.contributor.authorCheng, Jan-Fangen_GB
dc.contributor.authorTapia, Roxanneen_GB
dc.contributor.authorHan, Cliffen_GB
dc.contributor.authorGoodwin, Lynneen_GB
dc.contributor.authorPitluck, Samen_GB
dc.contributor.authorLiolios, Konstantinosen_GB
dc.contributor.authorPagani, Ioannaen_GB
dc.contributor.authorIvanova, Nataliaen_GB
dc.contributor.authorHuntemann, Marcelen_GB
dc.contributor.authorMavromatis, Konstantinosen_GB
dc.contributor.authorMikhailova, Nataliaen_GB
dc.contributor.authorPati, Amritaen_GB
dc.contributor.authorChen, Amyen_GB
dc.contributor.authorPalaniappan, Krishnaen_GB
dc.contributor.authorLand, Miriamen_GB
dc.contributor.authorHauser, Lorenen_GB
dc.contributor.authorBrambilla, Evelyne-Marieen_GB
dc.contributor.authorRohde, Manfreden_GB
dc.contributor.authorMwirichia, Romanoen_GB
dc.contributor.authorSikorski, Johannesen_GB
dc.contributor.authorTindall, Brian Jen_GB
dc.contributor.authorGöker, Markusen_GB
dc.contributor.authorBristow, Jamesen_GB
dc.contributor.authorEisen, Jonathan Aen_GB
dc.contributor.authorMarkowitz, Victoren_GB
dc.contributor.authorHugenholtz, Philipen_GB
dc.contributor.authorKlenk, Hans-Peteren_GB
dc.contributor.authorKyrpides, Nikos Cen_GB
dc.date.accessioned2012-08-07T12:23:26Z-
dc.date.available2012-08-07T12:23:26Z-
dc.date.issued2011-10-15-
dc.identifier.citationComplete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262). 2011, 5 (1):21-9 Stand Genomic Scien_GB
dc.identifier.issn1944-3277-
dc.identifier.pmid22180807-
dc.identifier.doi10.4056/sigs.2124912-
dc.identifier.urihttp://hdl.handle.net/10033/237552-
dc.description.abstractFluviicola taffensis O'Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic location in the genome-sequenced fraction of the tree of life. Strain RW262(T) forms a monophyletic lineage with uncultivated bacteria represented in freshwater 16S rRNA gene libraries. A similar phylogenetic differentiation occurs between freshwater and marine bacteria in the family Flavobacteriaceae, a sister family to Cryomorphaceae. Most remarkable is the inability of this freshwater bacterium to grow in the presence of Na(+) ions. All other genera in the family Cryomorphaceae are from marine habitats and have an absolute requirement for Na(+) ions or natural sea water. F. taffensis is the first member of the family Cryomorphaceae with a completely sequenced and publicly available genome. The 4,633,577 bp long genome with its 4,082 protein-coding and 49 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.en_GB
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen_GB
dc.titleComplete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type strain (RW262).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen_GB

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