2.50
Hdl Handle:
http://hdl.handle.net/10033/247131
Title:
Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).
Authors:
Mavromatis, Konstantinos; Chertkov, Olga; Lapidus, Alla; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan-Fang; Han, Cliff; Tapia, Roxanne; Bruce, David; Goodwin, Lynne A; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Brambilla, Evelyne-Marie; Rohde, Manfred; Spring, Stefan; Göker, Markus; Detter, John C; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C; Klenk, Hans-Peter; Woyke, Tanja
Abstract:
Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class 'Sphingobacteria' that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via 'ixotrophy'. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 protein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). 2012, 6 (2):210-9 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
25-May-2012
URI:
http://hdl.handle.net/10033/247131
DOI:
10.4056/sigs.2816096
PubMed ID:
22768364
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorMavromatis, Konstantinosen_GB
dc.contributor.authorChertkov, Olgaen_GB
dc.contributor.authorLapidus, Allaen_GB
dc.contributor.authorNolan, Matten_GB
dc.contributor.authorLucas, Susanen_GB
dc.contributor.authorTice, Hopeen_GB
dc.contributor.authorDel Rio, Tijana Glavinaen_GB
dc.contributor.authorCheng, Jan-Fangen_GB
dc.contributor.authorHan, Cliffen_GB
dc.contributor.authorTapia, Roxanneen_GB
dc.contributor.authorBruce, Daviden_GB
dc.contributor.authorGoodwin, Lynne Aen_GB
dc.contributor.authorPitluck, Samen_GB
dc.contributor.authorHuntemann, Marcelen_GB
dc.contributor.authorLiolios, Konstantinosen_GB
dc.contributor.authorPagani, Ioannaen_GB
dc.contributor.authorIvanova, Nataliaen_GB
dc.contributor.authorMikhailova, Nataliaen_GB
dc.contributor.authorPati, Amritaen_GB
dc.contributor.authorChen, Amyen_GB
dc.contributor.authorPalaniappan, Krishnaen_GB
dc.contributor.authorLand, Miriamen_GB
dc.contributor.authorBrambilla, Evelyne-Marieen_GB
dc.contributor.authorRohde, Manfreden_GB
dc.contributor.authorSpring, Stefanen_GB
dc.contributor.authorGöker, Markusen_GB
dc.contributor.authorDetter, John Cen_GB
dc.contributor.authorBristow, Jamesen_GB
dc.contributor.authorEisen, Jonathan Aen_GB
dc.contributor.authorMarkowitz, Victoren_GB
dc.contributor.authorHugenholtz, Philipen_GB
dc.contributor.authorKyrpides, Nikos Cen_GB
dc.contributor.authorKlenk, Hans-Peteren_GB
dc.contributor.authorWoyke, Tanjaen_GB
dc.date.accessioned2012-10-05T08:29:11Z-
dc.date.available2012-10-05T08:29:11Z-
dc.date.issued2012-05-25-
dc.identifier.citationPermanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1). 2012, 6 (2):210-9 Stand Genomic Scien_GB
dc.identifier.issn1944-3277-
dc.identifier.pmid22768364-
dc.identifier.doi10.4056/sigs.2816096-
dc.identifier.urihttp://hdl.handle.net/10033/247131-
dc.description.abstractSaprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class 'Sphingobacteria' that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via 'ixotrophy'. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 protein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.en_GB
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen_GB
dc.titlePermanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen_GB

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