Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).

2.50
Hdl Handle:
http://hdl.handle.net/10033/250254
Title:
Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).
Authors:
Copeland, Alex; Zeytun, Ahmet; Yassawong, Montri; Nolan, Matt; Lucas, Susan; Hammon, Nancy; Deshpande, Shweta; Cheng, Jan-Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A; Pitluck, Sam; Mavromatis, Konstantinos; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Jeffries, Cynthia D; Brambilla, Evelyne-Marie; Rohde, Manfred; Sikorski, Johannes; Pukall, Rüdiger; Göker, Markus; Detter, John C; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C; Klenk, Hans-Peter; Lapidus, Alla
Abstract:
Deinococcus proteolyticus (ex Kobatake et al. 1973) Brook and Murray 1981 is one of currently 47 species in the genus Deinococcus within the family Deinococcaceae. Strain MRP(T) was isolated from feces of Lama glama and possesses extreme radiation resistance, a trait is shares with various other species of the genus Deinococcus, with D. proteolyticus being resistant up to 1.5 Mrad of gamma radiation. Strain MRP(T) is of further interest for its carotenoid pigment. The genome presented here is only the fifth completed genome sequence of a member of the genus Deinococcus (and the forth type strain) to be published, and will hopefully contribute to a better understanding of how members of this genus adapted to high gamma- or UV ionizing-radiation. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,886,836 bp long genome with its four large plasmids of lengths 97 kbp, 132 kbp, 196 kbp and 315 kbp harbors 2,741 protein-coding and 58 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). 2012, 6 (2):240-50 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
25-May-2012
URI:
http://hdl.handle.net/10033/250254
DOI:
10.4056/sigs.2756060
PubMed ID:
22768367
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorCopeland, Alexen_GB
dc.contributor.authorZeytun, Ahmeten_GB
dc.contributor.authorYassawong, Montrien_GB
dc.contributor.authorNolan, Matten_GB
dc.contributor.authorLucas, Susanen_GB
dc.contributor.authorHammon, Nancyen_GB
dc.contributor.authorDeshpande, Shwetaen_GB
dc.contributor.authorCheng, Jan-Fangen_GB
dc.contributor.authorHan, Cliffen_GB
dc.contributor.authorTapia, Roxanneen_GB
dc.contributor.authorGoodwin, Lynne Aen_GB
dc.contributor.authorPitluck, Samen_GB
dc.contributor.authorMavromatis, Konstantinosen_GB
dc.contributor.authorLiolios, Konstantinosen_GB
dc.contributor.authorPagani, Ioannaen_GB
dc.contributor.authorIvanova, Nataliaen_GB
dc.contributor.authorMikhailova, Nataliaen_GB
dc.contributor.authorPati, Amritaen_GB
dc.contributor.authorChen, Amyen_GB
dc.contributor.authorPalaniappan, Krishnaen_GB
dc.contributor.authorLand, Miriamen_GB
dc.contributor.authorHauser, Lorenen_GB
dc.contributor.authorJeffries, Cynthia Den_GB
dc.contributor.authorBrambilla, Evelyne-Marieen_GB
dc.contributor.authorRohde, Manfreden_GB
dc.contributor.authorSikorski, Johannesen_GB
dc.contributor.authorPukall, Rüdigeren_GB
dc.contributor.authorGöker, Markusen_GB
dc.contributor.authorDetter, John Cen_GB
dc.contributor.authorWoyke, Tanjaen_GB
dc.contributor.authorBristow, Jamesen_GB
dc.contributor.authorEisen, Jonathan Aen_GB
dc.contributor.authorMarkowitz, Victoren_GB
dc.contributor.authorHugenholtz, Philipen_GB
dc.contributor.authorKyrpides, Nikos Cen_GB
dc.contributor.authorKlenk, Hans-Peteren_GB
dc.contributor.authorLapidus, Allaen_GB
dc.date.accessioned2012-10-25T12:46:37Z-
dc.date.available2012-10-25T12:46:37Z-
dc.date.issued2012-05-25-
dc.identifier.citationComplete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)). 2012, 6 (2):240-50 Stand Genomic Scien_GB
dc.identifier.issn1944-3277-
dc.identifier.pmid22768367-
dc.identifier.doi10.4056/sigs.2756060-
dc.identifier.urihttp://hdl.handle.net/10033/250254-
dc.description.abstractDeinococcus proteolyticus (ex Kobatake et al. 1973) Brook and Murray 1981 is one of currently 47 species in the genus Deinococcus within the family Deinococcaceae. Strain MRP(T) was isolated from feces of Lama glama and possesses extreme radiation resistance, a trait is shares with various other species of the genus Deinococcus, with D. proteolyticus being resistant up to 1.5 Mrad of gamma radiation. Strain MRP(T) is of further interest for its carotenoid pigment. The genome presented here is only the fifth completed genome sequence of a member of the genus Deinococcus (and the forth type strain) to be published, and will hopefully contribute to a better understanding of how members of this genus adapted to high gamma- or UV ionizing-radiation. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,886,836 bp long genome with its four large plasmids of lengths 97 kbp, 132 kbp, 196 kbp and 315 kbp harbors 2,741 protein-coding and 58 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.en_GB
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen_GB
dc.titleComplete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteolyticus type strain (MRP(T)).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen_GB

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