2.50
Hdl Handle:
http://hdl.handle.net/10033/325184
Title:
GeneReporter--sequence-based document retrieval and annotation.
Authors:
Bartsch, Annekathrin; Bunk, Boyke; Haddad, Isam; Klein, Johannes; Münch, Richard; Johl, Thorsten; Kärst, Uwe; Jänsch, Lothar ( 0000-0002-5655-1181 ) ; Jahn, Dieter; Retter, Ida
Abstract:
GeneReporter is a web tool that reports functional information and relevant literature on a protein-coding sequence of interest. Its purpose is to support both manual genome annotation and document retrieval. PubMed references corresponding to a sequence are detected by the extraction of query words from UniProt entries of homologous sequences. Data on protein families, domains, potential cofactors, structure, function, cellular localization, metabolic contribution and corresponding DNA binding sites complement the information on a given gene product of interest.
Affiliation:
Helmholtz Centre for infection research, Inhoffenstr. 7, D-38124 Braunschweig, Germany.
Citation:
GeneReporter--sequence-based document retrieval and annotation. 2011, 27 (7):1034-5 Bioinformatics
Journal:
Bioinformatics (Oxford, England)
Issue Date:
1-Apr-2011
URI:
http://hdl.handle.net/10033/325184
DOI:
10.1093/bioinformatics/btr047
PubMed ID:
21310745
Type:
Article
Language:
en
ISSN:
1367-4811
Appears in Collections:
publications of the research group cellular proteom research (CPRO)

Full metadata record

DC FieldValue Language
dc.contributor.authorBartsch, Annekathrinen
dc.contributor.authorBunk, Boykeen
dc.contributor.authorHaddad, Isamen
dc.contributor.authorKlein, Johannesen
dc.contributor.authorMünch, Richarden
dc.contributor.authorJohl, Thorstenen
dc.contributor.authorKärst, Uween
dc.contributor.authorJänsch, Lotharen
dc.contributor.authorJahn, Dieteren
dc.contributor.authorRetter, Idaen
dc.date.accessioned2014-08-25T09:14:20Zen
dc.date.available2014-08-25T09:14:20Zen
dc.date.issued2011-04-01en
dc.identifier.citationGeneReporter--sequence-based document retrieval and annotation. 2011, 27 (7):1034-5 Bioinformaticsen
dc.identifier.issn1367-4811en
dc.identifier.pmid21310745en
dc.identifier.doi10.1093/bioinformatics/btr047en
dc.identifier.urihttp://hdl.handle.net/10033/325184en
dc.description.abstractGeneReporter is a web tool that reports functional information and relevant literature on a protein-coding sequence of interest. Its purpose is to support both manual genome annotation and document retrieval. PubMed references corresponding to a sequence are detected by the extraction of query words from UniProt entries of homologous sequences. Data on protein families, domains, potential cofactors, structure, function, cellular localization, metabolic contribution and corresponding DNA binding sites complement the information on a given gene product of interest.en
dc.language.isoenen
dc.rightsArchived with thanks to Bioinformatics (Oxford, England)en
dc.subject.meshComputational Biologyen
dc.subject.meshData Miningen
dc.subject.meshDatabases, Geneticen
dc.subject.meshInterneten
dc.subject.meshMolecular Sequence Annotationen
dc.subject.meshProteinsen
dc.subject.meshPubMeden
dc.subject.meshSequence Analysis, Proteinen
dc.subject.meshSequence Homology, Amino Aciden
dc.subject.meshSoftwareen
dc.titleGeneReporter--sequence-based document retrieval and annotation.en
dc.typeArticleen
dc.contributor.departmentHelmholtz Centre for infection research, Inhoffenstr. 7, D-38124 Braunschweig, Germany.en
dc.identifier.journalBioinformatics (Oxford, England)en

Related articles on PubMed

This item is licensed under a Creative Commons License
Creative Commons
All Items in HZI are protected by copyright, with all rights reserved, unless otherwise indicated.