2.50
Hdl Handle:
http://hdl.handle.net/10033/331843
Title:
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3).
Authors:
Han, Cliff; Spring, Stefan; Lapidus, Alla; Del Rio, Tijana Glavina; Tice, Hope; Copeland, Alex; Cheng, Jan-Fang; Lucas, Susan; Chen, Feng; Nolan, Matt; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia C; Saunders, Elizabeth; Chertkov, Olga; Brettin, Thomas; Göker, Markus; Rohde, Manfred; Bristow, Jim; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C; Klenk, Hans-Peter; Detter, John C
Abstract:
Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 comb. nov. is the type species of the rapidly growing genus Pedobacter within the family Sphingobacteriaceae of the phylum 'Bacteroidetes'. P. heparinus is of interest, because it was the first isolated strain shown to grow with heparin as sole carbon and nitrogen source and because it produces several enzymes involved in the degradation of mucopolysaccharides. All available data about this species are based on a sole strain that was isolated from dry soil. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first report on a complete genome sequence of a member of the genus Pedobacter, and the 5,167,383 bp long single replicon genome with its 4287 protein-coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3). 2009, 1 (1):54-62 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
2009
URI:
http://hdl.handle.net/10033/331843
DOI:
10.4056/sigs.22138
PubMed ID:
21304637
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorHan, Cliffen
dc.contributor.authorSpring, Stefanen
dc.contributor.authorLapidus, Allaen
dc.contributor.authorDel Rio, Tijana Glavinaen
dc.contributor.authorTice, Hopeen
dc.contributor.authorCopeland, Alexen
dc.contributor.authorCheng, Jan-Fangen
dc.contributor.authorLucas, Susanen
dc.contributor.authorChen, Fengen
dc.contributor.authorNolan, Matten
dc.contributor.authorBruce, Daviden
dc.contributor.authorGoodwin, Lynneen
dc.contributor.authorPitluck, Samen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorMavromatis, Konstantinosen
dc.contributor.authorMikhailova, Nataliaen
dc.contributor.authorPati, Amritaen
dc.contributor.authorChen, Amyen
dc.contributor.authorPalaniappan, Krishnaen
dc.contributor.authorLand, Miriamen
dc.contributor.authorHauser, Lorenen
dc.contributor.authorChang, Yun-Juanen
dc.contributor.authorJeffries, Cynthia Cen
dc.contributor.authorSaunders, Elizabethen
dc.contributor.authorChertkov, Olgaen
dc.contributor.authorBrettin, Thomasen
dc.contributor.authorGöker, Markusen
dc.contributor.authorRohde, Manfreden
dc.contributor.authorBristow, Jimen
dc.contributor.authorEisen, Jonathan Aen
dc.contributor.authorMarkowitz, Victoren
dc.contributor.authorHugenholtz, Philipen
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorKlenk, Hans-Peteren
dc.contributor.authorDetter, John Cen
dc.date.accessioned2014-09-25T09:38:03Z-
dc.date.available2014-09-25T09:38:03Z-
dc.date.issued2009-
dc.identifier.citationComplete genome sequence of Pedobacter heparinus type strain (HIM 762-3). 2009, 1 (1):54-62 Stand Genomic Scien
dc.identifier.issn1944-3277-
dc.identifier.pmid21304637-
dc.identifier.doi10.4056/sigs.22138-
dc.identifier.urihttp://hdl.handle.net/10033/331843-
dc.description.abstractPedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 comb. nov. is the type species of the rapidly growing genus Pedobacter within the family Sphingobacteriaceae of the phylum 'Bacteroidetes'. P. heparinus is of interest, because it was the first isolated strain shown to grow with heparin as sole carbon and nitrogen source and because it produces several enzymes involved in the degradation of mucopolysaccharides. All available data about this species are based on a sole strain that was isolated from dry soil. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first report on a complete genome sequence of a member of the genus Pedobacter, and the 5,167,383 bp long single replicon genome with its 4287 protein-coding and 54 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.en
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen
dc.titleComplete genome sequence of Pedobacter heparinus type strain (HIM 762-3).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen

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