Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.

2.50
Hdl Handle:
http://hdl.handle.net/10033/333890
Title:
Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.
Authors:
Breider, Sven; Teshima, Hazuki; Petersen, Jörn; Chertkov, Olga; Dalingault, Hajnalka; Chen, Amy; Pati, Amrita; Ivanova, Natalia; Lapidus, Alla; Goodwin, Lynne A; Chain, Patrick; Detter, John C; Rohde, Manfred; Tindall, Brian J; Kyrpides, Nikos C; Woyke, Tanja; Simon, Meinhard; Göker, Markus; Klenk, Hans-Peter; Brinkhoff, Thorsten
Abstract:
Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.
Affiliation:
Institute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .
Citation:
Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment. 2014, 9 (3):687-703 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
15-Jun-2014
URI:
http://hdl.handle.net/10033/333890
DOI:
10.4056/sigs.3828824
PubMed ID:
25197454
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
publications of the central unit for microscopy (ZEIM)

Full metadata record

DC FieldValue Language
dc.contributor.authorBreider, Svenen
dc.contributor.authorTeshima, Hazukien
dc.contributor.authorPetersen, Jörnen
dc.contributor.authorChertkov, Olgaen
dc.contributor.authorDalingault, Hajnalkaen
dc.contributor.authorChen, Amyen
dc.contributor.authorPati, Amritaen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorLapidus, Allaen
dc.contributor.authorGoodwin, Lynne Aen
dc.contributor.authorChain, Patricken
dc.contributor.authorDetter, John Cen
dc.contributor.authorRohde, Manfreden
dc.contributor.authorTindall, Brian Jen
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorSimon, Meinharden
dc.contributor.authorGöker, Markusen
dc.contributor.authorKlenk, Hans-Peteren
dc.contributor.authorBrinkhoff, Thorstenen
dc.date.accessioned2014-11-10T14:38:57Z-
dc.date.available2014-11-10T14:38:57Z-
dc.date.issued2014-06-15-
dc.identifier.citationGenome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment. 2014, 9 (3):687-703 Stand Genomic Scien
dc.identifier.issn1944-3277-
dc.identifier.pmid25197454-
dc.identifier.doi10.4056/sigs.3828824-
dc.identifier.urihttp://hdl.handle.net/10033/333890-
dc.description.abstractLeisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.en
dc.language.isoenen
dc.titleGenome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.en
dc.typeArticleen
dc.contributor.departmentInstitute for Chemistry and Biology of the Marine Environment, University of Oldenburg, Oldenburg, Germany .en
dc.identifier.journalStandards in genomic sciencesen

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