Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

2.50
Hdl Handle:
http://hdl.handle.net/10033/333896
Title:
Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.
Authors:
Göker, Markus; Lu, Megan; Fiebig, Anne; Nolan, Matt; Lapidus, Alla; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan-Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Mayilraj, Shanmugam; Rohde, Manfred; Detter, John C; Bunk, Boyke; Spring, Stefan; Wirth, Reinhard; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C; Klenk, Hans-Peter
Abstract:
Methanoplanus limicola Wildgruber et al. 1984 is a mesophilic methanogen that was isolated from a swamp composed of drilling waste near Naples, Italy, shortly after the Archaea were recognized as a separate domain of life. Methanoplanus is the type genus in the family Methanoplanaceae, a taxon that felt into disuse since modern 16S rRNA gene sequences-based taxonomy was established. Methanoplanus is now placed within the Methanomicrobiaceae, a family that is so far poorly characterized at the genome level. The only other type strain of the genus with a sequenced genome, Methanoplanus petrolearius SEBR 4847(T), turned out to be misclassified and required reclassification to Methanolacinia. Both, Methanoplanus and Methanolacinia, needed taxonomic emendations due to a significant deviation of the G+C content of their genomes from previously published (pre-genome-sequence era) values. Until now genome sequences were published for only four of the 33 species with validly published names in the Methanomicrobiaceae. Here we describe the features of M. limicola, together with the improved-high-quality draft genome sequence and annotation of the type strain, M3(T). The 3,200,946 bp long chromosome (permanent draft sequence) with its 3,064 protein-coding and 65 RNA genes is a part of the G enomic E ncyclopedia of B acteria and Archaea project.
Affiliation:
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Citation:
Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. 2014, 9 (3):1076-88 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
15-Jun-2014
URI:
http://hdl.handle.net/10033/333896
DOI:
10.4056/sigs.5138968
PubMed ID:
25197484
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
publications of the central unit for microscopy (ZEIM)

Full metadata record

DC FieldValue Language
dc.contributor.authorGöker, Markusen
dc.contributor.authorLu, Meganen
dc.contributor.authorFiebig, Anneen
dc.contributor.authorNolan, Matten
dc.contributor.authorLapidus, Allaen
dc.contributor.authorTice, Hopeen
dc.contributor.authorDel Rio, Tijana Glavinaen
dc.contributor.authorCheng, Jan-Fangen
dc.contributor.authorHan, Cliffen
dc.contributor.authorTapia, Roxanneen
dc.contributor.authorGoodwin, Lynne Aen
dc.contributor.authorPitluck, Samen
dc.contributor.authorLiolios, Konstantinosen
dc.contributor.authorMavromatis, Konstantinosen
dc.contributor.authorPagani, Ioannaen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorMikhailova, Nataliaen
dc.contributor.authorPati, Amritaen
dc.contributor.authorChen, Amyen
dc.contributor.authorPalaniappan, Krishnaen
dc.contributor.authorLand, Miriamen
dc.contributor.authorMayilraj, Shanmugamen
dc.contributor.authorRohde, Manfreden
dc.contributor.authorDetter, John Cen
dc.contributor.authorBunk, Boykeen
dc.contributor.authorSpring, Stefanen
dc.contributor.authorWirth, Reinharden
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorBristow, Jamesen
dc.contributor.authorEisen, Jonathan Aen
dc.contributor.authorMarkowitz, Victoren
dc.contributor.authorHugenholtz, Philipen
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorKlenk, Hans-Peteren
dc.date.accessioned2014-11-10T15:24:49Z-
dc.date.available2014-11-10T15:24:49Z-
dc.date.issued2014-06-15-
dc.identifier.citationGenome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia. 2014, 9 (3):1076-88 Stand Genomic Scien
dc.identifier.issn1944-3277-
dc.identifier.pmid25197484-
dc.identifier.doi10.4056/sigs.5138968-
dc.identifier.urihttp://hdl.handle.net/10033/333896-
dc.description.abstractMethanoplanus limicola Wildgruber et al. 1984 is a mesophilic methanogen that was isolated from a swamp composed of drilling waste near Naples, Italy, shortly after the Archaea were recognized as a separate domain of life. Methanoplanus is the type genus in the family Methanoplanaceae, a taxon that felt into disuse since modern 16S rRNA gene sequences-based taxonomy was established. Methanoplanus is now placed within the Methanomicrobiaceae, a family that is so far poorly characterized at the genome level. The only other type strain of the genus with a sequenced genome, Methanoplanus petrolearius SEBR 4847(T), turned out to be misclassified and required reclassification to Methanolacinia. Both, Methanoplanus and Methanolacinia, needed taxonomic emendations due to a significant deviation of the G+C content of their genomes from previously published (pre-genome-sequence era) values. Until now genome sequences were published for only four of the 33 species with validly published names in the Methanomicrobiaceae. Here we describe the features of M. limicola, together with the improved-high-quality draft genome sequence and annotation of the type strain, M3(T). The 3,200,946 bp long chromosome (permanent draft sequence) with its 3,064 protein-coding and 65 RNA genes is a part of the G enomic E ncyclopedia of B acteria and Archaea project.en
dc.language.isoenen
dc.titleGenome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.en
dc.typeArticleen
dc.contributor.departmentLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.en
dc.identifier.journalStandards in genomic sciencesen

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