Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring.

2.50
Hdl Handle:
http://hdl.handle.net/10033/334406
Title:
Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring.
Authors:
Göker, Markus; Spring, Stefan; Scheuner, Carmen; Anderson, Iain; Zeytun, Ahmet; Nolan, Matt; Lucas, Susan; Tice, Hope; Del Rio, Tijana Glavina; Cheng, Jan-Fang; Han, Cliff; Tapia, Roxanne; Goodwin, Lynne A; Pitluck, Sam; Liolios, Konstantinos; Mavromatis, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D; Rohde, Manfred; Detter, John C; Woyke, Tanja; Bristow, James; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C; Klenk, Hans-Peter; Lapidus, Alla
Abstract:
Thermotoga thermarum Windberger et al. 1989 is a member to the genomically well characterized genus Thermotoga in the phylum 'Thermotogae'. T. thermarum is of interest for its origin from a continental solfataric spring vs. predominantly marine oil reservoirs of other members of the genus. The genome of strain LA3T also provides fresh data for the phylogenomic positioning of the (hyper-)thermophilic bacteria. T. thermarum strain LA3(T) is the fourth sequenced genome of a type strain from the genus Thermotoga, and the sixth in the family Thermotogaceae to be formally described in a publication. Phylogenetic analyses do not reveal significant discrepancies between the current classification of the group, 16S rRNA gene data and whole-genome sequences. Nevertheless, T. thermarum significantly differs from other Thermotoga species regarding its iron-sulfur cluster synthesis, as it contains only a minimal set of the necessary proteins. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,039,943 bp long chromosome with its 2,015 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Affiliation:
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.
Citation:
Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring. 2014, 9 (3):1105-17 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
15-Jun-2014
URI:
http://hdl.handle.net/10033/334406
DOI:
10.4056/sigs.3016383
PubMed ID:
25197486
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
publications of the central unit for microscopy (ZEIM)

Full metadata record

DC FieldValue Language
dc.contributor.authorGöker, Markusen
dc.contributor.authorSpring, Stefanen
dc.contributor.authorScheuner, Carmenen
dc.contributor.authorAnderson, Iainen
dc.contributor.authorZeytun, Ahmeten
dc.contributor.authorNolan, Matten
dc.contributor.authorLucas, Susanen
dc.contributor.authorTice, Hopeen
dc.contributor.authorDel Rio, Tijana Glavinaen
dc.contributor.authorCheng, Jan-Fangen
dc.contributor.authorHan, Cliffen
dc.contributor.authorTapia, Roxanneen
dc.contributor.authorGoodwin, Lynne Aen
dc.contributor.authorPitluck, Samen
dc.contributor.authorLiolios, Konstantinosen
dc.contributor.authorMavromatis, Konstantinosen
dc.contributor.authorPagani, Ioannaen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorMikhailova, Nataliaen
dc.contributor.authorPati, Amritaen
dc.contributor.authorChen, Amyen
dc.contributor.authorPalaniappan, Krishnaen
dc.contributor.authorLand, Miriamen
dc.contributor.authorHauser, Lorenen
dc.contributor.authorChang, Yun-Juanen
dc.contributor.authorJeffries, Cynthia Den
dc.contributor.authorRohde, Manfreden
dc.contributor.authorDetter, John Cen
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorBristow, Jamesen
dc.contributor.authorEisen, Jonathan Aen
dc.contributor.authorMarkowitz, Victoren
dc.contributor.authorHugenholtz, Philipen
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorKlenk, Hans-Peteren
dc.contributor.authorLapidus, Allaen
dc.date.accessioned2014-11-10T14:58:14Z-
dc.date.available2014-11-10T14:58:14Z-
dc.date.issued2014-06-15-
dc.identifier.citationGenome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring. 2014, 9 (3):1105-17 Stand Genomic Scien
dc.identifier.issn1944-3277-
dc.identifier.pmid25197486-
dc.identifier.doi10.4056/sigs.3016383-
dc.identifier.urihttp://hdl.handle.net/10033/334406-
dc.description.abstractThermotoga thermarum Windberger et al. 1989 is a member to the genomically well characterized genus Thermotoga in the phylum 'Thermotogae'. T. thermarum is of interest for its origin from a continental solfataric spring vs. predominantly marine oil reservoirs of other members of the genus. The genome of strain LA3T also provides fresh data for the phylogenomic positioning of the (hyper-)thermophilic bacteria. T. thermarum strain LA3(T) is the fourth sequenced genome of a type strain from the genus Thermotoga, and the sixth in the family Thermotogaceae to be formally described in a publication. Phylogenetic analyses do not reveal significant discrepancies between the current classification of the group, 16S rRNA gene data and whole-genome sequences. Nevertheless, T. thermarum significantly differs from other Thermotoga species regarding its iron-sulfur cluster synthesis, as it contains only a minimal set of the necessary proteins. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 2,039,943 bp long chromosome with its 2,015 protein-coding and 51 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.en
dc.language.isoenen
dc.titleGenome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring.en
dc.typeArticleen
dc.contributor.departmentLeibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany.en
dc.identifier.journalStandards in genomic sciencesen

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