High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.

2.50
Hdl Handle:
http://hdl.handle.net/10033/583962
Title:
High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.
Authors:
Choi, Dong Han; Ahn, Chisang; Jang, Gwang Il; Lapidus, Alla; Han, James; Reddy, T B K; Huntemann, Marcel; Pati, Amrita; Ivanova, Natalia; Markowitz, Victor; Rohde, Manfred ( 0000-0003-0522-3580 ) ; Tindall, Brian; Göker, Markus; Woyke, Tanja; Klenk, Hans-Peter; Kyrpides, Nikos C; Cho, Byung Cheol
Abstract:
Gracilimonas tropica Choi et al. 2009 is a member of order Sphingobacteriales, class Sphingobacteriia. Three species of the genus Gracilimonas have been isolated from marine seawater or a salt mine and showed extremely halotolerant and mesophilic features, although close relatives are extremely halophilic or thermophilic. The type strain of the type species of Gracilimonas, G. tropica DSM19535(T), was isolated from a Synechococcus culture which was established from the tropical sea-surface water of the Pacific Ocean. The genome of the strain DSM19535(T) was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes project. Here, we describe the genomic features of the strain. The 3,831,242 bp long draft genome consists of 48 contigs with 3373 protein-coding and 53 RNA genes. The strain seems to adapt to phosphate limitation and requires amino acids from external environment. In addition, genomic analyses and pasteurization experiment suggested that G. tropica DSM19535(T) did not form spore.
Citation:
High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture. 2015, 10:98 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
2015
URI:
http://hdl.handle.net/10033/583962
DOI:
10.1186/s40793-015-0088-8
PubMed ID:
26566423
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
publications of the central unit for microscopy (ZEIM)

Full metadata record

DC FieldValue Language
dc.contributor.authorChoi, Dong Hanen
dc.contributor.authorAhn, Chisangen
dc.contributor.authorJang, Gwang Ilen
dc.contributor.authorLapidus, Allaen
dc.contributor.authorHan, Jamesen
dc.contributor.authorReddy, T B Ken
dc.contributor.authorHuntemann, Marcelen
dc.contributor.authorPati, Amritaen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorMarkowitz, Victoren
dc.contributor.authorRohde, Manfreden
dc.contributor.authorTindall, Brianen
dc.contributor.authorGöker, Markusen
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorKlenk, Hans-Peteren
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorCho, Byung Cheolen
dc.date.accessioned2015-12-15T15:36:09Zen
dc.date.available2015-12-15T15:36:09Zen
dc.date.issued2015en
dc.identifier.citationHigh-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture. 2015, 10:98 Stand Genomic Scien
dc.identifier.issn1944-3277en
dc.identifier.pmid26566423en
dc.identifier.doi10.1186/s40793-015-0088-8en
dc.identifier.urihttp://hdl.handle.net/10033/583962en
dc.description.abstractGracilimonas tropica Choi et al. 2009 is a member of order Sphingobacteriales, class Sphingobacteriia. Three species of the genus Gracilimonas have been isolated from marine seawater or a salt mine and showed extremely halotolerant and mesophilic features, although close relatives are extremely halophilic or thermophilic. The type strain of the type species of Gracilimonas, G. tropica DSM19535(T), was isolated from a Synechococcus culture which was established from the tropical sea-surface water of the Pacific Ocean. The genome of the strain DSM19535(T) was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes project. Here, we describe the genomic features of the strain. The 3,831,242 bp long draft genome consists of 48 contigs with 3373 protein-coding and 53 RNA genes. The strain seems to adapt to phosphate limitation and requires amino acids from external environment. In addition, genomic analyses and pasteurization experiment suggested that G. tropica DSM19535(T) did not form spore.en
dc.language.isoenen
dc.titleHigh-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture.en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen

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