Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

2.50
Hdl Handle:
http://hdl.handle.net/10033/615664
Title:
Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.
Authors:
Dogs, Marco; Teshima, Hazuki; Petersen, Jörn; Fiebig, Anne; Chertkov, Olga; Dalingault, Hajnalka; Chen, Amy; Pati, Amrita; Goodwin, Lynne A; Chain, Patrick; Detter, John C; Ivanova, Natalia; Lapidus, Alla; Rohde, Manfred ( 0000-0003-0522-3580 ) ; Gronow, Sabine; Kyrpides, Nikos C; Woyke, Tanja; Simon, Meinhard; Göker, Markus; Klenk, Hans-Peter; Brinkhoff, Thorsten
Abstract:
TF-218(T) is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabolite production and its anaerobic lifestyle, which have also been described for its closest relative Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218(T) contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five replicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218(T) possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.
Affiliation:
Helmholtz Centre for infection research, Inhoffenstr. 7, 38124 Braunschweig, Germany.
Citation:
Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. 2013, 9 (1):142-59 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
16-Oct-2013
URI:
http://hdl.handle.net/10033/615664
DOI:
10.4056/sigs.4287962
PubMed ID:
24501652
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
publications of the central unit for microscopy (ZEIM)

Full metadata record

DC FieldValue Language
dc.contributor.authorDogs, Marcoen
dc.contributor.authorTeshima, Hazukien
dc.contributor.authorPetersen, Jörnen
dc.contributor.authorFiebig, Anneen
dc.contributor.authorChertkov, Olgaen
dc.contributor.authorDalingault, Hajnalkaen
dc.contributor.authorChen, Amyen
dc.contributor.authorPati, Amritaen
dc.contributor.authorGoodwin, Lynne Aen
dc.contributor.authorChain, Patricken
dc.contributor.authorDetter, John Cen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorLapidus, Allaen
dc.contributor.authorRohde, Manfreden
dc.contributor.authorGronow, Sabineen
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorSimon, Meinharden
dc.contributor.authorGöker, Markusen
dc.contributor.authorKlenk, Hans-Peteren
dc.contributor.authorBrinkhoff, Thorstenen
dc.date.accessioned2016-07-07T08:58:50Z-
dc.date.available2016-07-07T08:58:50Z-
dc.date.issued2013-10-16-
dc.identifier.citationGenome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis. 2013, 9 (1):142-59 Stand Genomic Scien
dc.identifier.issn1944-3277-
dc.identifier.pmid24501652-
dc.identifier.doi10.4056/sigs.4287962-
dc.identifier.urihttp://hdl.handle.net/10033/615664-
dc.description.abstractTF-218(T) is the type strain of the species Phaeobacter daeponensis Yoon et al. 2007, a facultatively anaerobic Phaeobacter species isolated from tidal flats. Here we describe the draft genome sequence and annotation of this bacterium together with previously unreported aspects of its phenotype. We analyzed the genome for genes involved in secondary metabolite production and its anaerobic lifestyle, which have also been described for its closest relative Phaeobacter caeruleus. The 4,642,596 bp long genome of strain TF-218(T) contains 4,310 protein-coding genes and 78 RNA genes including four rRNA operons and consists of five replicons: one chromosome and four extrachromosomal elements with sizes of 276 kb, 174 kb, 117 kb and 90 kb. Genome analysis showed that TF-218(T) possesses all of the genes for indigoidine biosynthesis, and on specific media the strain showed a blue pigmentation. We also found genes for dissimilatory nitrate reduction, gene-transfer agents, NRPS/ PKS genes and signaling systems homologous to the LuxR/I system.en
dc.language.isoenen
dc.rights.urihttp://creativecommons.org/licenses/by-nc-sa/4.0/*
dc.titleGenome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.en
dc.typeArticleen
dc.contributor.departmentHelmholtz Centre for infection research, Inhoffenstr. 7, 38124 Braunschweig, Germany.en
dc.identifier.journalStandards in genomic sciencesen

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