High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T).

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Hdl Handle:
http://hdl.handle.net/10033/618473
Title:
High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T).
Authors:
Tashkandy, Nisreen; Sabban, Sari; Fakieh, Mohammad; Meier-Kolthoff, Jan P; Huang, Sixing; Tindall, Brian J; Rohde, Manfred; Baeshen, Mohammed N; Baeshen, Nabih A; Lapidus, Alla; Copeland, Alex; Pillay, Manoj; Reddy, T B K; Huntemann, Marcel; Pati, Amrita; Ivanova, Natalia; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Klenk, Hans-Peter; Kyrpides, Nikos C; Hahnke, Richard L
Abstract:
Flavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5(T) (DSM 17707(T)) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5(T) is part of the G enomic E ncyclopedia of B acteria and A rchaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5(T) has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5(T). Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5(T) feeds rather on proteins than saccharides and lipids.
Citation:
High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). 2016, 11:42 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
2016
URI:
http://hdl.handle.net/10033/618473
DOI:
10.1186/s40793-016-0159-5
PubMed ID:
27313837
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
publications of the central unit for microscopy (ZEIM)

Full metadata record

DC FieldValue Language
dc.contributor.authorTashkandy, Nisreenen
dc.contributor.authorSabban, Sarien
dc.contributor.authorFakieh, Mohammaden
dc.contributor.authorMeier-Kolthoff, Jan Pen
dc.contributor.authorHuang, Sixingen
dc.contributor.authorTindall, Brian Jen
dc.contributor.authorRohde, Manfreden
dc.contributor.authorBaeshen, Mohammed Nen
dc.contributor.authorBaeshen, Nabih Aen
dc.contributor.authorLapidus, Allaen
dc.contributor.authorCopeland, Alexen
dc.contributor.authorPillay, Manojen
dc.contributor.authorReddy, T B Ken
dc.contributor.authorHuntemann, Marcelen
dc.contributor.authorPati, Amritaen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorMarkowitz, Victoren
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorGöker, Markusen
dc.contributor.authorKlenk, Hans-Peteren
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorHahnke, Richard Len
dc.date.accessioned2016-08-17T10:05:31Z-
dc.date.available2016-08-17T10:05:31Z-
dc.date.issued2016-
dc.identifier.citationHigh-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T). 2016, 11:42 Stand Genomic Scien
dc.identifier.issn1944-3277-
dc.identifier.pmid27313837-
dc.identifier.doi10.1186/s40793-016-0159-5-
dc.identifier.urihttp://hdl.handle.net/10033/618473-
dc.description.abstractFlavobacterium suncheonense is a member of the family Flavobacteriaceae in the phylum Bacteroidetes. Strain GH29-5(T) (DSM 17707(T)) was isolated from greenhouse soil in Suncheon, South Korea. F. suncheonense GH29-5(T) is part of the G enomic E ncyclopedia of B acteria and A rchaea project. The 2,880,663 bp long draft genome consists of 54 scaffolds with 2739 protein-coding genes and 82 RNA genes. The genome of strain GH29-5(T) has 117 genes encoding peptidases but a small number of genes encoding carbohydrate active enzymes (51 CAZymes). Metallo and serine peptidases were found most frequently. Among CAZymes, eight glycoside hydrolase families, nine glycosyl transferase families, two carbohydrate binding module families and four carbohydrate esterase families were identified. Suprisingly, polysaccharides utilization loci (PULs) were not found in strain GH29-5(T). Based on the coherent physiological and genomic characteristics we suggest that F. suncheonense GH29-5(T) feeds rather on proteins than saccharides and lipids.en
dc.language.isoenen
dc.titleHigh-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen

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