XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments

2.50
Hdl Handle:
http://hdl.handle.net/10033/620714
Title:
XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments
Authors:
Swertz, Morris A; Velde, van d K J; Tesson, Bruno M; Scheltema, Richard A; Arends, Danny; Vera, Gonzalo; Alberts, Rudi; Dijkstra, Martijn; Schofield, Paul; Schughart, Klaus; Hancock, John M; Smedley, Damian; Wolstencroft, Katy; Goble, Carole; de Brock, Engbert O; Jones, Andrew R; Parkinson, Helen E; Jansen, Ritsert C
Abstract:
Abstract We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP ( http://www.xgap.org ) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans.
Citation:
Genome Biology. 2010 Mar 09;11(3):R27
Issue Date:
9-Mar-2010
URI:
http://dx.doi.org/10.1186/gb-2010-11-3-r27; http://hdl.handle.net/10033/620714
Type:
Journal Article
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DC FieldValue Language
dc.contributor.authorSwertz, Morris Aen
dc.contributor.authorVelde, van d K Jen
dc.contributor.authorTesson, Bruno Men
dc.contributor.authorScheltema, Richard Aen
dc.contributor.authorArends, Dannyen
dc.contributor.authorVera, Gonzaloen
dc.contributor.authorAlberts, Rudien
dc.contributor.authorDijkstra, Martijnen
dc.contributor.authorSchofield, Paulen
dc.contributor.authorSchughart, Klausen
dc.contributor.authorHancock, John Men
dc.contributor.authorSmedley, Damianen
dc.contributor.authorWolstencroft, Katyen
dc.contributor.authorGoble, Caroleen
dc.contributor.authorde Brock, Engbert Oen
dc.contributor.authorJones, Andrew Ren
dc.contributor.authorParkinson, Helen Een
dc.contributor.authorJansen, Ritsert Cen
dc.date.accessioned2017-01-16T15:32:51Z-
dc.date.available2017-01-16T15:32:51Z-
dc.date.issued2010-03-09en
dc.identifier.citationGenome Biology. 2010 Mar 09;11(3):R27en
dc.identifier.urihttp://dx.doi.org/10.1186/gb-2010-11-3-r27en
dc.identifier.urihttp://hdl.handle.net/10033/620714-
dc.description.abstractAbstract We present an extensible software model for the genotype and phenotype community, XGAP. Readers can download a standard XGAP ( http://www.xgap.org ) or auto-generate a custom version using MOLGENIS with programming interfaces to R-software and web-services or user interfaces for biologists. XGAP has simple load formats for any type of genotype, epigenotype, transcript, protein, metabolite or other phenotype data. Current functionality includes tools ranging from eQTL analysis in mouse to genome-wide association studies in humans.en
dc.titleXGAP: a uniform and extensible data model and software platform for genotype and phenotype experimentsen
dc.typeJournal Articleen
dc.language.rfc3066enen
dc.rights.holderSwertz et al.en
dc.date.updated2015-09-04T08:30:05Zen
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