Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae

2.50
Hdl Handle:
http://hdl.handle.net/10033/620947
Title:
Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae
Authors:
Scheuner, Carmen; Tindall, Brian J; Lu, Megan; Nolan, Matt; Lapidus, Alla; Cheng, Jan-Fang; Goodwin, Lynne; Pitluck, Sam; Huntemann, Marcel; Liolios, Konstantinos; Pagani, Ioanna; Mavromatis, Konstantinos; Ivanova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Jeffries, Cynthia D; Hauser, Loren; Land, Miriam; Mwirichia, Romano; Rohde, Manfred; Abt, Birte; Detter, John C; Woyke, Tanja; Eisen, Jonathan A; Markowitz, Victor; Hugenholtz, Philip; Göker, Markus; Kyrpides, Nikos C; Klenk, Hans-Peter
Abstract:
Abstract Planctomyces brasiliensis Schlesner 1990 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall consisting of a proteinaceous layer rather than a peptidoglycan layer. The first strains of P. brasiliensis, including the type strain IFAM 1448T, were isolated from a water sample of Lagoa Vermelha, a salt pit near Rio de Janeiro, Brasil. This is the second completed genome sequence of a type strain of the genus Planctomyces to be published and the sixth type strain genome sequence from the family Planctomycetaceae. The 6,006,602 bp long genome with its 4,811 protein-coding and 54 RNA genes is a part of the G enomic E ncyclopedia of Bacteria and Archaea project. Phylogenomic analyses indicate that the classification within the Planctomycetaceae is partially in conflict with its evolutionary history, as the positioning of Schlesneria renders the genus Planctomyces paraphyletic. A re-analysis of published fatty-acid measurements also does not support the current arrangement of the two genera. A quantitative comparison of phylogenetic and phenotypic aspects indicates that the three Planctomyces species with type strains available in public culture collections should be placed in separate genera. Thus the genera Gimesia, Planctopirus and Rubinisphaera are proposed to accommodate P. maris, P. limnophilus and P. brasiliensis, respectively. Pronounced differences between the reported G + C content of Gemmata obscuriglobus, Singulisphaera acidiphila and Zavarzinella formosa and G + C content calculated from their genome sequences call for emendation of their species descriptions. In addition to other features, the range of G + C values reported for the genera within the Planctomycetaceae indicates that the descriptions of the family and the order should be emended.
Citation:
Standards in Genomic Sciences. 2014 Dec 08;9(1):10
Issue Date:
8-Dec-2014
URI:
http://dx.doi.org/10.1186/1944-3277-9-10; http://hdl.handle.net/10033/620947
Type:
Journal Article
Appears in Collections:
publications of the central unit for microscopy (ZEIM)

Full metadata record

DC FieldValue Language
dc.contributor.authorScheuner, Carmenen
dc.contributor.authorTindall, Brian Jen
dc.contributor.authorLu, Meganen
dc.contributor.authorNolan, Matten
dc.contributor.authorLapidus, Allaen
dc.contributor.authorCheng, Jan-Fangen
dc.contributor.authorGoodwin, Lynneen
dc.contributor.authorPitluck, Samen
dc.contributor.authorHuntemann, Marcelen
dc.contributor.authorLiolios, Konstantinosen
dc.contributor.authorPagani, Ioannaen
dc.contributor.authorMavromatis, Konstantinosen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorPati, Amritaen
dc.contributor.authorChen, Amyen
dc.contributor.authorPalaniappan, Krishnaen
dc.contributor.authorJeffries, Cynthia Den
dc.contributor.authorHauser, Lorenen
dc.contributor.authorLand, Miriamen
dc.contributor.authorMwirichia, Romanoen
dc.contributor.authorRohde, Manfreden
dc.contributor.authorAbt, Birteen
dc.contributor.authorDetter, John Cen
dc.contributor.authorWoyke, Tanjaen
dc.contributor.authorEisen, Jonathan Aen
dc.contributor.authorMarkowitz, Victoren
dc.contributor.authorHugenholtz, Philipen
dc.contributor.authorGöker, Markusen
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorKlenk, Hans-Peteren
dc.date.accessioned2017-06-15T08:29:37Z-
dc.date.available2017-06-15T08:29:37Z-
dc.date.issued2014-12-08en
dc.identifier.citationStandards in Genomic Sciences. 2014 Dec 08;9(1):10en
dc.identifier.urihttp://dx.doi.org/10.1186/1944-3277-9-10en
dc.identifier.urihttp://hdl.handle.net/10033/620947-
dc.description.abstractAbstract Planctomyces brasiliensis Schlesner 1990 belongs to the order Planctomycetales, which differs from other bacterial taxa by several distinctive features such as internal cell compartmentalization, multiplication by forming buds directly from the spherical, ovoid or pear-shaped mother cell and a cell wall consisting of a proteinaceous layer rather than a peptidoglycan layer. The first strains of P. brasiliensis, including the type strain IFAM 1448T, were isolated from a water sample of Lagoa Vermelha, a salt pit near Rio de Janeiro, Brasil. This is the second completed genome sequence of a type strain of the genus Planctomyces to be published and the sixth type strain genome sequence from the family Planctomycetaceae. The 6,006,602 bp long genome with its 4,811 protein-coding and 54 RNA genes is a part of the G enomic E ncyclopedia of Bacteria and Archaea project. Phylogenomic analyses indicate that the classification within the Planctomycetaceae is partially in conflict with its evolutionary history, as the positioning of Schlesneria renders the genus Planctomyces paraphyletic. A re-analysis of published fatty-acid measurements also does not support the current arrangement of the two genera. A quantitative comparison of phylogenetic and phenotypic aspects indicates that the three Planctomyces species with type strains available in public culture collections should be placed in separate genera. Thus the genera Gimesia, Planctopirus and Rubinisphaera are proposed to accommodate P. maris, P. limnophilus and P. brasiliensis, respectively. Pronounced differences between the reported G + C content of Gemmata obscuriglobus, Singulisphaera acidiphila and Zavarzinella formosa and G + C content calculated from their genome sequences call for emendation of their species descriptions. In addition to other features, the range of G + C values reported for the genera within the Planctomycetaceae indicates that the descriptions of the family and the order should be emended.en
dc.titleComplete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceaeen
dc.typeJournal Articleen
dc.language.rfc3066enen
dc.rights.holderScheuner et al.; licensee BioMed Central Ltd.en
dc.date.updated2015-09-04T08:24:43Zen
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