Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).
Name:
mavrommatis-gronow et al_final.pdf
Size:
1.513Mb
Format:
PDF
Description:
Open Access publication
Average rating
Cast your vote
You can rate an item by clicking the amount of stars they wish to award to this item.
When enough users have cast their vote on this item, the average rating will also be shown.
Star rating
Your vote was cast
Thank you for your feedback
Thank you for your feedback
Authors
Mavrommatis, KonstantinosGronow, Sabine
Saunders, Elizabeth
Land, Miriam
Lapidus, Alla
Copeland, Alex
Glavina Del Rio, Tijana
Nolan, Matt
Lucas, Susan
Chen, Feng
Tice, Hope
Cheng, Jan-Fang
Bruce, David
Goodwin, Lynne
Pitluck, Sam
Pati, Amrita
Ivanova, Natalia
Chen, Amy
Palaniappan, Krishna
Chain, Patrick
Hauser, Loren
Chang, Yun-Juan
Jeffries, Cynthia D
Brettin, Thomas
Detter, John C
Han, Cliff
Bristow, James
Göker, Markus
Rohde, Manfred
Eisen, Jonathan A
Markowitz, Victor
Kyrpides, Nikos C
Klenk, Hans-Peter
Hugenholtz, Philip
Issue Date
2009
Metadata
Show full item recordAbstract
Capnocytophaga ochracea (Prévot et al. 1956) Leadbetter et al. 1982 is the type species of the genus Capnocytophaga. It is of interest because of its location in the Flavobacteriaceae, a genomically not yet charted family within the order Flavobacteriales. The species grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. C. ochracea is known as a capnophilic (CO(2)-requiring) organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%), here only in the presence of 5% CO(2). Strain VPI 2845(T), the type strain of the species, is portrayed in this report as a gliding, Gram-negative bacterium, originally isolated from a human oral cavity. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the flavobacterial genus Capnocytophaga, and the 2,612,925 bp long single replicon genome with its 2193 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.Citation
Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). 2009, 1 (2):101-9 Stand Genomic SciJournal
Standards in genomic sciencesPubMed ID
21304645Type
ArticleLanguage
enISSN
1944-3277ae974a485f413a2113503eed53cd6c53
10.4056/sigs.15195
Scopus Count
The following license files are associated with this item:
Related articles
- Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).
- Authors: Lapidus A, Pukall R, Labuttii K, Copeland A, Del Rio TG, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Rohde M, Göker M, Pati A, Ivanova N, Mavrommatis K, Chen A, Palaniappan K, D'haeseleer P, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP
- Issue date: 2009 Jul 20
- Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1).
- Authors: Pukall R, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Lucas S, Chen F, Tice H, Cheng JF, Chertkov O, Bruce D, Goodwin L, Kuske C, Brettin T, Detter JC, Han C, Pitluck S, Pati A, Mavrommatis K, Ivanova N, Ovchinnikova G, Chen A, Palaniappan K, Schneider S, Rohde M, Chain P, D'haeseleer P, Göker M, Bristow J, Eisen JA, Markowitz V, Kyrpides NC, Klenk HP, Hugenholtz P
- Issue date: 2009 Nov 22
- Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255).
- Authors: Saunders E, Pukall R, Abt B, Lapidus A, Glavina Del Rio T, Copeland A, Tice H, Cheng JF, Lucas S, Chen F, Nolan M, Bruce D, Goodwin L, Pitluck S, Ivanova N, Mavromatis K, Ovchinnikova G, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Chain P, Meincke L, Sims D, Brettin T, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Han C
- Issue date: 2009 Sep 28
- Complete genome sequence of Catenulispora acidiphila type strain (ID 139908).
- Authors: Copeland A, Lapidus A, Glavina Del Rio T, Nolan M, Lucas S, Chen F, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Mikhailova N, Pati A, Ivanova N, Mavromatis K, Chen A, Palaniappan K, Chain P, Land M, Hauser L, Chang YJ, Jeffries CD, Chertkov O, Brettin T, Detter JC, Han C, Ali Z, Tindall BJ, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP
- Issue date: 2009 Sep 24
- Complete genome sequence of Atopobium parvulum type strain (IPP 1246).
- Authors: Copeland A, Sikorski J, Lapidus A, Nolan M, Del Rio TG, Lucas S, Chen F, Tice H, Pitluck S, Cheng JF, Pukall R, Chertkov O, Brettin T, Han C, Detter JC, Kuske C, Bruce D, Goodwin L, Ivanova N, Mavromatis K, Mikhailova N, Chen A, Palaniappan K, Chain P, Rohde M, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC
- Issue date: 2009 Sep 23