2.50
Hdl Handle:
http://hdl.handle.net/10033/332043
Title:
Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).
Authors:
Mavrommatis, Konstantinos; Gronow, Sabine; Saunders, Elizabeth; Land, Miriam; Lapidus, Alla; Copeland, Alex; Glavina Del Rio, Tijana; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan-Fang; Bruce, David; Goodwin, Lynne; Pitluck, Sam; Pati, Amrita; Ivanova, Natalia; Chen, Amy; Palaniappan, Krishna; Chain, Patrick; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D; Brettin, Thomas; Detter, John C; Han, Cliff; Bristow, James; Göker, Markus; Rohde, Manfred; Eisen, Jonathan A; Markowitz, Victor; Kyrpides, Nikos C; Klenk, Hans-Peter; Hugenholtz, Philip
Abstract:
Capnocytophaga ochracea (Prévot et al. 1956) Leadbetter et al. 1982 is the type species of the genus Capnocytophaga. It is of interest because of its location in the Flavobacteriaceae, a genomically not yet charted family within the order Flavobacteriales. The species grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. C. ochracea is known as a capnophilic (CO(2)-requiring) organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%), here only in the presence of 5% CO(2). Strain VPI 2845(T), the type strain of the species, is portrayed in this report as a gliding, Gram-negative bacterium, originally isolated from a human oral cavity. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the flavobacterial genus Capnocytophaga, and the 2,612,925 bp long single replicon genome with its 2193 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Citation:
Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). 2009, 1 (2):101-9 Stand Genomic Sci
Journal:
Standards in genomic sciences
Issue Date:
2009
URI:
http://hdl.handle.net/10033/332043
DOI:
10.4056/sigs.15195
PubMed ID:
21304645
Type:
Article
Language:
en
ISSN:
1944-3277
Appears in Collections:
Publications of Dept. Medizinische Mikrobiologie (MMIK)

Full metadata record

DC FieldValue Language
dc.contributor.authorMavrommatis, Konstantinosen
dc.contributor.authorGronow, Sabineen
dc.contributor.authorSaunders, Elizabethen
dc.contributor.authorLand, Miriamen
dc.contributor.authorLapidus, Allaen
dc.contributor.authorCopeland, Alexen
dc.contributor.authorGlavina Del Rio, Tijanaen
dc.contributor.authorNolan, Matten
dc.contributor.authorLucas, Susanen
dc.contributor.authorChen, Fengen
dc.contributor.authorTice, Hopeen
dc.contributor.authorCheng, Jan-Fangen
dc.contributor.authorBruce, Daviden
dc.contributor.authorGoodwin, Lynneen
dc.contributor.authorPitluck, Samen
dc.contributor.authorPati, Amritaen
dc.contributor.authorIvanova, Nataliaen
dc.contributor.authorChen, Amyen
dc.contributor.authorPalaniappan, Krishnaen
dc.contributor.authorChain, Patricken
dc.contributor.authorHauser, Lorenen
dc.contributor.authorChang, Yun-Juanen
dc.contributor.authorJeffries, Cynthia Den
dc.contributor.authorBrettin, Thomasen
dc.contributor.authorDetter, John Cen
dc.contributor.authorHan, Cliffen
dc.contributor.authorBristow, Jamesen
dc.contributor.authorGöker, Markusen
dc.contributor.authorRohde, Manfreden
dc.contributor.authorEisen, Jonathan Aen
dc.contributor.authorMarkowitz, Victoren
dc.contributor.authorKyrpides, Nikos Cen
dc.contributor.authorKlenk, Hans-Peteren
dc.contributor.authorHugenholtz, Philipen
dc.date.accessioned2014-10-02T10:21:40Z-
dc.date.available2014-10-02T10:21:40Z-
dc.date.issued2009-
dc.identifier.citationComplete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). 2009, 1 (2):101-9 Stand Genomic Scien
dc.identifier.issn1944-3277-
dc.identifier.pmid21304645-
dc.identifier.doi10.4056/sigs.15195-
dc.identifier.urihttp://hdl.handle.net/10033/332043-
dc.description.abstractCapnocytophaga ochracea (Prévot et al. 1956) Leadbetter et al. 1982 is the type species of the genus Capnocytophaga. It is of interest because of its location in the Flavobacteriaceae, a genomically not yet charted family within the order Flavobacteriales. The species grows as fusiform to rod shaped cells which tend to form clumps and are able to move by gliding. C. ochracea is known as a capnophilic (CO(2)-requiring) organism with the ability to grow under anaerobic as well as aerobic conditions (oxygen concentration larger than 15%), here only in the presence of 5% CO(2). Strain VPI 2845(T), the type strain of the species, is portrayed in this report as a gliding, Gram-negative bacterium, originally isolated from a human oral cavity. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome sequence from the flavobacterial genus Capnocytophaga, and the 2,612,925 bp long single replicon genome with its 2193 protein-coding and 59 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.en
dc.language.isoenen
dc.rightsArchived with thanks to Standards in genomic sciencesen
dc.titleComplete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).en
dc.typeArticleen
dc.identifier.journalStandards in genomic sciencesen

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